Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs574293 chr10:99699426 G/A 5.45E-5 173 24.52 27.33 19.03 KM Plot
PCPG rs5743437 chr8:6733868 T/C 1.34E-6 172 10.73 19 27.3 KM Plot
PCPG rs5743439 chr8:6733800 C/A 1.16E-5 171 13.27 19.3 27.27 KM Plot
PCPG rs5743440 chr8:6733773 C/T 1.16E-5 171 13.27 19.3 27.27 KM Plot
PCPG rs5743464 chr8:6732058 T/A 7.25E-6 177 13.27 18.7 27.33 KM Plot
PCPG rs5743465 chr8:6732057 G/C 7.25E-6 177 13.27 18.7 27.33 KM Plot
PCPG rs57486514 chr3:108535106 C/CA 6.34E-5 174 25.47 20.3 22.7 KM Plot
PCPG rs57492102 chr16:89975572 A/G 0.00018 174 25.87 20.28 3.17 KM Plot
PCPG rs57495703 chr3:39240015 C/T 4.36E-7 174 25.17 25.53 21.98 KM Plot
PCPG rs57505611 chr16:89587579 C/T 0.000269 177 26.78 25.67 19.25 KM Plot
PCPG rs5752263 chr22:21276601 C/G 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs5752272 chr22:21286562 C/A 0.000138 175 12.93 31.9 25.47 KM Plot
PCPG rs5752273 chr22:21287643 A/G 7.74E-5 177 12.93 31.47 25.2 KM Plot
PCPG rs5752274 chr22:21287911 A/G 0.000107 176 12.57 31.68 25 KM Plot
PCPG rs5752284 chr22:21292744 C/T 7.74E-5 177 12.93 31.47 25.2 KM Plot